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                "",
                "For in-depth proteome analyses from minute sample amount we needed QTOF type MS with ion mobility separation. Ion mobility is a great extension to MS that delivers information about the three-dimensional structure of an ion, and increases peak capacity and confidence in compound characterization. Other needed features were; ",
                "1) The instrument can synchronize the quadrupole with the IMS elution time to allow for a high MS\/MS acquisition speed, leading to an increased fragmentation depth and there must be algorithms for intelligent targeting of low-level precursors",
                "2) The MS instrument must be capable of real-time data acquisition a data processing, enabling a high spectrum repetition rate of >100Hz in MS\/MS mode (including ion mobility separation and without sacrificing sensitivity) to obtain highest possible identification of both peptides and proteins, i.e. achieving high sequence coverage of the identified proteins",
                "3) Mass resolution 60000 independent of MS or MS\/MS sequencing speed",
                "4) Reproducibility of Collisional Cross Section (CCS) value determination <0.5 % RSD",
                "5) Pre-defined methods for DDA, DIA, PRM delivered, where both m\/z and ion mobility are used for selectivity (i.e. window selection in DIA and PRM, and possibility to integrate various LC vendors into the instrument control software and the data-file format must be open architecture to enable easy input for various bioinformatics approaches in-house.",
                "",
                "The timsTOF Pro system comes with a dual-TIMS (trapped ion mobility spectrometry) analyzer optimized for high-speed shotgun proteomics. It has nearly 100% duty cycle, making this parallel accumulation serial fragmentation technique (PASEF) perfectly suited for nanoflow LC-MS analysis of enzymatically digested complex protein mixtures. The timsTOF Pro from Bruker is the only instrument in the market that has TIMS technology allowing PASEF, dia-PASEF and prm-PASEF acquisition methods. We also have large-scale clinical applications where we plan to use this instrument in conjunction with Evosep One LC."
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